Program blastn tblastn tblastx blastp Database Bd21 8x release Bd21 8x release proteins Bd21 8x release CDS Bd21 8x release genes Bd21 8x TAU genes Bd21 8x TAU proteins Bd21 8x TAU CDS Bd21 8x TAU cDNAs Bd21 EST superpool (CCXG) Bd21 Stem ESTs Bd21 Leaves ESTs Bd21 Seed ESTs Bd21 Callus ESTs Bd21 Root ESTs Bd21 Diurnally Sampled Root ESTs Bd21 Diurnally Sampled Flower RNA ESTs Bd21 Diurnally Sampled Leaves & Stems ESTs Bd21 Diurnally Sampled Whole Seedlings ESTs Bd21 Diurnally Sampled Leavs, Stems, and Callus ESTs Bd21 Developing Seeds ESTs Bd21 Leaf and Drought-stress Leaf ESTs Bd21 Flower and Drought-stress Flower ESTs Bd21 biotic- and abiotic-stress ESTs Bd21 Root Tips ESTs Bd2-3 Root Tips ESTs Bd3-1 and 3-2 Root Tips ESTs Bd18-1 Root Tips ESTs
Filter for Low complexity Mask database repeats Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15) Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options: Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities BLAST XML Hit Table Descriptions 0 1 10 50 100 250 500 1000 Alignments 0 1 10 50 100 250 500 1000
